IDEASstates/IDEAShumanHem
	Segmentations for human data by IDEAS both alone and jointly with mouse

BlueprintFilesForIdeas.txt
	URLs for the bigwig files from blueprint that were used in the IDEAS
	segmentations.  This includes dnase, chip, and input files.

atac
	Folder of ATAC bigwig files that was processed through our pipeline to
	use with the IDEAS segmentations.  ATAC signal must be multipled by 
	100 for use with IDEAS (normal is between 0 and 1).

chips
	Other files used for input in the IDEAS bp24v2_2 run.

RNA/HumanVISION_RNAseq_hg38_genes_tpm.txt
	This has the TPM values for the Blueprint RNA for selected samples.
	The genes are from Gencode v22.

atac_commonbgfdr01.hg38.bw
atac_commonpkfdr01.hg38.bw
        Regions of genome with ATAC signal used as peaks or background in common
        with all the cell types used for this IDEAS run.

TSSs_GENCODEv35_basic.bed
	Transcription start sites from Gencode v35, coordinates in hg38.

The epigenomic data were obtained from:

1    The Blueprint Consortium
    Ref: David Bujold, David Anderson de Lima Morais, Carol Gauthier, Catherine Cote, Maxime Caron, Tony Kwan, Kuang Chung Chen, Jonathan Laperle, Alexei Nordell Markovits, Tomi Pastinen, Bryan Caron, Alain Veilleux, Pierre-Etienne Jacques, Guillaume Bourque (2016) The International Human Epigenome Consortium Data Portal. Cell Systems 3, P496-499.E2
    DOI:https://doi.org/10.1016/j.cels.2016.10.019
    website: http://www.blueprint-epigenome.eu/

2    Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution. M Ryan Corces, Jason D Buenrostro, Beijing Wu, Peyton G Greenside, Steven M Chan, Julie L Koenig, Michael P Snyder, Jonathan K Pritchard, Anshul Kundaje, William J Greenleaf, Ravindra Majeti & Howard Y Chang. (2016) Nature Genetics, 48: 1193-1203