track meryDiffExpr
shortLabel Diff Expr
longLabel Differential Expression
superTrack on
type bed 6+
group vision

    track meryDiffExprRaw
    shortLabel Raw FPKMs
    longLabel Raw FPKMs from all cell types
    type bigBarChart
    barChartBars LSK LSK CMP CMP MEP MEP G1E G1E ER4 ER4 CFU-E CFU-E ERY ERY CFU-MK CFU-MK MK MK GMP GMP NEU NEU MON MON
    barChartColors #228B22 #228B22 #EE7600 #EE7600 #CD6600 #CD6600 #EE6363 #EE6363 #CD5555 #CD5555 #FF3030 #FF3030 #FF0000 #FF0000 #8B7355 #8B7355 #8B5A2B #8B5A2B #008B8B #008B8B #1874CD #1874CD #4F94CD #4F94CD
    barChartLabel Cell types
    barChartUnit FPKM
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/rawBarChartTableFpkm.filtered.bigBarChart
    priority 25

    track meryDiffExprNorm
    shortLabel Normalized FPKMs
    longLabel FPKMs from all cell types normalized by EBSeq using median-ratio normalization
    type bigBarChart
    barChartBars LSK LSK CMP CMP MEP MEP G1E G1E ER4 ER4 CFU-E CFU-E ERY ERY CFU-MK CFU-MK MK MK GMP GMP NEU NEU MON MON
    barChartColors #228B22 #228B22 #EE7600 #EE7600 #CD6600 #CD6600 #EE6363 #EE6363 #CD5555 #CD5555 #FF3030 #FF3030 #FF0000 #FF0000 #8B7355 #8B7355 #8B5A2B #8B5A2B #008B8B #008B8B #1874CD #1874CD #4F94CD #4F94CD
    barChartLabel Cell types
    barChartUnit FPKM
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprNorm.bigBarChart
    priority 26

    track meryDiffExprEry
    shortLabel ERY DE
    longLabel Differential expression in the ERY branch
    type bigBarChart
    barChartBars LSK CMP MEP CFU-E ERY
    barChartColors #228B22 #EE7600 #CD6600 #FF3030 #FF0000
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprEry.bigBarChart
    priority 1

    track meryDiffExprMk
    shortLabel MK DE
    longLabel Differential expression in the MK branch
    type bigBarChart
    barChartBars LSK CMP MEP CFU-MK MK
    barChartColors #228B22 #EE7600 #CD6600 #8B7355 #8B5A2B
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr   
    bigDataUrl diffExpr/meryDiffExprMk.bigBarChart
    priority 8

    track meryDiffExprGmp
    shortLabel GMP DE
    longLabel Differential expression in the GMP branch
    type bigBarChart
    barChartBars LSK CMP GMP MON NEU
    barChartColors #228B22 #EE7600 #008B8B #1874CD #4F94CD 
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprGmp.bigBarChart
    priority 9

    track meryDiffExprEr4
    shortLabel ER4 DE
    longLabel Differential expression in G1E and G1E-ER4+E2 cells
    type bigBarChart
    barChartBars G1E G1E G1E-ER4+E2 G1E-ER4+E2
    barChartColors #EE6363 #EE6363 #CD5555 #CD5555
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprEr4.bigBarChart
    priority 5

    track meryDiffExprLskCmp
    shortLabel LSK-CMP DE
    longLabel Differential expression in LSK and CMP cells
    type bigBarChart
    barChartBars LSK LSK CMP CMP
    barChartColors #228B22 #228B22 #EE7600 #EE7600
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprLskCmp.bigBarChart
    priority 3

    track meryDiffExprLskEry
    shortLabel LSK-ERY DE
    longLabel Differential expression in LSK and ERY cells
    type bigBarChart
    barChartBars LSK LSK ERY ERY
    barChartColors #228B22 #228B22 #FF0000 #FF0000
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprLskEry.bigBarChart
    priority 2

    track meryDiffExprCmpMep
    shortLabel CMP-MEP DE
    longLabel Differential expression in CMP and MEP cells
    type bigBarChart
    barChartBars CMP CMP MEP MEP 
    barChartColors #EE7600 #EE7600 #CD6600 #CD6600
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprCmpMep.bigBarChart
    priority 4

    track meryDiffExprMepCfue
    shortLabel MEP-CFUE DE
    longLabel Differential expression in MEP and CFU-E cells
    type bigBarChart
    barChartBars MEP MEP CFU-E CFU-E
    barChartColors #CD6600 #CD6600 #FF3030 #FF3030
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprMepCfue.bigBarChart
    priority 6

    track meryDiffExprCfueEry
    shortLabel CFUE-ERY DE
    longLabel Differential expression in CFU-E and ERY cells
    type bigBarChart
    barChartBars CFU-E CFU-E ERY ERY
    barChartColors #FF3030 #FF3030 #FF0000 #FF0000
    barChartLabel Cell types
    barChartUnit Count
    barChartMetric mean
    maxLimit 8000
    maxItems 300
    defaultLabelFields name
    labelFields name
    parent meryDiffExpr
    bigDataUrl diffExpr/meryDiffExprCfueEry.bigBarChart
    priority 7